| Airport Channel | Alameda, CA | 2.7 miles | SW |
| Islais Creek Channel | San Francisco, CA | 9.7 miles | SW |
| Ford Channel | Contra Costa, CA | 11.7 miles | NW |
| Oyster Point Channel | San Mateo, CA | 11.7 miles | SW |
| Harbor Channel | Contra Costa, CA | 12.2 miles | NW |
| San Bruno Channel | San Mateo, CA | 12.3 miles | SW |
| Point Potrero Reach | San Francisco, CA | 12.5 miles | NW |
| Santa Fe Channel | Contra Costa, CA | 12.8 miles | NW |
| Richmond Harbor Entrance Channel | Contra Costa, CA | 13.3 miles | NW |
| Raccoon Strait | Marin, CA | 14 miles | NW |
| Southampton Shoal Channel | San Francisco, CA | 14.5 miles | NW |
| Golden Gate | San Francisco, CA | 14.6 miles | NW |
| Belmont Channel | San Mateo, CA | 17.3 miles | SW |
| South Channel (historical) | San Francisco, CA | 17.5 miles | SW |
| San Pablo Strait | Contra Costa, CA | 18.2 miles | NW |
| Suisun Point Channel | Solano, CA | 18.3 miles | NE |
| Bulls Head Channel | Contra Costa, CA | 19 miles | NE |
| Carquinez Strait | Solano, CA | 19 miles | NE |
| Bonita Channel | Marin, CA | 19.1 miles | NW |
| Corte Madera Channel | Marin, CA | 19.4 miles | NW |
| Pinole Shoal Channel | Contra Costa, CA | 19.6 miles | NW |
| East Bulls Head Channel | Contra Costa, CA | 19.9 miles | NE |
| Point Edith Crossing Range | Contra Costa, CA | 20.9 miles | NE |
| Seal Island Channel | Contra Costa, CA | 21.2 miles | NE |
| Preston Point Reach | Solano, CA | 21.6 miles | NE |
| Roe Island Channel | Solano, CA | 22 miles | NE |
| Mare Island Strait | Solano, CA | 22.2 miles | NW |
| Port Chicago Reach | Contra Costa, CA | 22.4 miles | NE |
| Fishermans Cut | Solano, CA | 22.4 miles | NE |
| West Reach | Solano, CA | 22.9 miles | NE |
| East Reach | Solano, CA | 23.3 miles | NE |
| Suisun Cutoff | Solano, CA | 24.2 miles | NE |
| West Reach | Contra Costa, CA | 25.5 miles | NE |
| New York Slough | Contra Costa, CA | 26.1 miles | NE |
| Middle Slough | Contra Costa, CA | 26.8 miles | NE |
| Moffett Channel | Santa Clara, CA | 26.8 miles | SE |
| East Reach | Contra Costa, CA | 26.8 miles | NE |
| Antioch Reach | Sacramento, CA | 28.4 miles | NE |
| McNear Channel | Sonoma, CA | 38.6 miles | NW |
| Webb Reach | Contra Costa, CA | 40.3 miles | NE |
| Hayes Reach | San Joaquin, CA | 40.7 miles | NE |
| Venice Reach | San Joaquin, CA | 41.6 miles | NE |
| Mandeville Reach | San Joaquin, CA | 41.8 miles | NE |
| Singapore Cut | San Joaquin, CA | 41.9 miles | NE |
| Three River Reach | San Joaquin, CA | 42.2 miles | NE |
| Stockton Deep Water Channel | San Joaquin, CA | 42.2 miles | NE |
| Burns Reach | San Joaquin, CA | 43 miles | NE |
| The Jordan | San Francisco, CA | 43.7 miles | SW |
| Haypress Reach | San Joaquin, CA | 44.2 miles | NE |
| Sacramento River Deep Water Ship Channel | Sacramento, CA | 47.8 miles | NE |
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